The 5k sumps I've had are identical to late dished 4k sumps, they are larger than the early 4k ones. No problems with fitment into a ke1x with the ones I've had, and my motor sits lower than stock with a modded mount on on side.
Not sure if they are the same as van ones... You have to remember that a lot of 5k's came into the country as jap import motors, so unless the motor came out of a van, you can't really be sure of the motors original application.
The main reason the upright motors go harder is because the inlet manifold has a straighter, less restrictive path into the head.
As for rpm levels, a 3k is capable of a lot more revs than what say a 5k is. Do some research on rod ratios and piston acceleration. Also you have to keep in mind that at 9k+ rpm a 5k will need a proportional increase in valve area (over a 3k) to meet airflow requirements. Think offset valve guides, thinner valve stems, and multi-angled oversized valves, plus porting and flow bench time.